I have enclosed the structure inside a rectangular box. Now I would like to translate it in order to generate the image of a periodic plane.
Using the supercell.py script on the PyMOL wiki, the following figure was generated. The command was
supercell 40,4,1, withmates=1at the PyMOL prompt.
How can I have little boxes around all proteins?
After aligning all proteins on the surface, the output is the following.